fix taxonomy issues

assets/sass/_layout.sass

@@ -39,7 +39,7 @@ header h1, header h1 a
     color: $text
     text-decoration: none
     padding: 0
-    transition: color 0.4s
+    transition: color 0.4s ease-in-out
     &:hover, &:focus
         color: $accent-light
 
@@ -67,9 +67,10 @@ nav ul li a
     color: $text
     text-decoration: none
     font-weight: 500
-    transition: background 0.4s
+    transition: background 0.4s ease-in-out
     &:hover, &:focus
         background: $accent-dark
+        color: $text
 
 @media (max-width: 600px)
     header

assets/sass/_links.sass

@@ -1,5 +1,12 @@
 /* _text.sass */
 
+a
+    color: $primary
+    text-decoration: underline
+    transition: color 0.3s ease-in-out
+    &:hover, &:focus
+        color: $accent
+
 #quick-links
     text-align: left
 
@@ -31,6 +38,6 @@
     color: $darkest
     text-decoration: none
     font-weight: 500
-    transition: background 0.4s
+    transition: background 0.3s ease-in-out
     &:hover, &:focus
         background: $accent-light

assets/sass/_publications.sass

@@ -0,0 +1,13 @@
+#publications
+    ul
+        list-style: none
+        margin: 0
+        padding: 0
+        display: flex
+        flex-direction: column
+        gap: 1em
+
+        li
+            background: $surface
+            border-radius: 8px
+            padding: 1em 1.5em

assets/sass/_taxonomy.sass

@@ -7,40 +7,37 @@ table#taxonomy-table
     background: $surface
     text-align: left
 
-    tr:nth-child(even)
+    tr
+        border-bottom: 3px solid $background
+        &:nth-child(even)
             background: darken($surface, 2%)
-        transition: background 0.4s
-    tr:nth-child(odd)
+            transition: background 0.4s ease-in-out
+        &:nth-child(odd)
             background: lighten($surface, 3%)
-        transition: background 0.4s
-    tr:hover, tr:focus
+            transition: background 0.4s ease-in-out
+        &:hover, &:focus
             background: $border
 
-#taxonomy-table thead
+    thead
         text-align: left
         border: none
         background: $darkest
         border-radius: $border-radius $border-radius 0 0
 
-#taxonomy-table th
+    th
         color: $text
         padding: 0.6rem 0.6rem
         text-align: left
         font-weight: 600
         border: none
 
-#taxonomy-table td
+    td
         padding: 0.3rem 0.6rem
         text-align: left
         font-weight: 600
         border: none
 
-#taxonomy-table tr
-    border-bottom: 3px solid $background
-    &:hover, &:focus
-        background: $primary-light
-
-#taxonomy-table a.term-link
+    a.term-link
         padding: 0.2rem 0.6rem
         margin: 0.2rem
         display: inline-block
@@ -48,11 +45,12 @@ table#taxonomy-table
         text-decoration: none
         font-weight: 500
         color: $text
-    transition: color 0.4s
+        transition: color 0.4s ease-in-out, background 0.4s ease-in-out
         &:hover, &:focus
-        color: $darkest
+            color: $darkest !important
+            background: $text-subtle !important
 
-#taxonomy-table a.taxonomy-name
+    a.taxonomy-name
         padding: 0
         margin: 0.2rem
         display: inline-block
@@ -60,7 +58,7 @@ table#taxonomy-table
         text-decoration: none
         font-weight: 500
         color: $text
-    transition: color 0.4s
+        transition: color 0.4s ease-in-out
         &:hover, &:focus
             color: $accent-light
 
@@ -72,7 +70,7 @@ table#taxonomy-table
     text-decoration: none
     font-weight: 500
     color: $text
-    transition: color 0.4s
+    transition: color 0.4s ease-in-out
     font-size: 1.2rem
     &:hover, &:focus
         color: $darkest

assets/sass/main.sass

@@ -3,3 +3,4 @@
 @import "layout"
 @import "taxonomy"
 @import "links"
+@import "publications"

layouts/tools/page.html

@@ -26,8 +26,10 @@
     <h2>At a Glance</h2>
     <table id="taxonomy-table">
       <tbody>
+        {{ $params := .Params }}
         {{ range $taxonomyname, $taxonomy := .Site.Taxonomies }}
-        {{ with $taxonomy }}
+          {{ $terms := index $params $taxonomyname }}
+          {{ if $terms }}
           <tr>
             <td>
               <a 
@@ -37,8 +39,8 @@
             </a>
           </td>
           <td>
-            {{ range $key, $value := $taxonomy }}
-              {{ partial "term-link.html" (dict "name" $key "taxonomy" $taxonomyname) }}
+            {{ range $term := $terms }}
+              {{ partial "term-link.html" (dict "name" $term "taxonomy" $taxonomyname) }}
             {{ end }}
           </td>
         </tr>
@@ -54,21 +56,29 @@
   </section>
   
   {{ with .Params.publications}}
-  <section>
+  <section id="publications">
     <h2>Publications</h2>
     <ul>
       {{ range $citation, $pub := site.Data.publications }}
       {{ range $pub }}
       {{ if in $.Params.publications .key }}
       <li>
-        {{ if .year }} <strong>{{ .year }}</strong>: {{ end }}
-        {{ if .title }} <em>{{ .title }}</em> {{ end }}
-        {{ if .author }} <br /> by {{ delimit .author " | " | html }} {{ end }}
-        {{ if .booktitle }} <br />Appears in <em>{{ .booktitle }}</em> {{ end }}
-        {{ if .journal }} <br />Appears in <em>{{ .journal }}</em> {{ end }}
-        {{ if .volume }} <strong>{{ .volume }}</strong> {{ end }}
+        {{ if .title }} <strong>{{ .title }}</strong> {{ end }}
+        {{ if .year }}
+        {{ if .month }}
+          ({{ .month }} {{.year }}) 
+        {{ else }}
+          ({{ .year }}) 
+        {{ end }}
+        {{ end }}
+        {{ if .author }} by {{ index .author 0 }}{{ if (gt (len .author) 1) }} et. al. {{ end }}{{ end }}
+        {{ if .booktitle }}  | Appears in <em>{{ .booktitle }}</em> {{ end }}
         {{ if .pages }} ({{ .pages }}) {{ end }}
-        {{ if .doi }} <br /><a href="https://doi.org/{{ . }}" target="_blank" rel="noopener">DOI: {{ .doi }}</a> {{ end }}
+        {{ if .journal }}  | Appears in <em>{{ .journal }}</em> {{ end }}
+        {{ if .volume }} | Volume {{ .volume }} {{ end }}
+        {{ if .publisher }}  | Published by <em>{{ .publisher }}</em> {{ end }}
+        {{ if .doi }} <br /><a href="https://doi.org/{{ . }}" target="_blank" rel="noopener">{{ .doi }}</a> 
+        {{ else if .url }} <br /><a href="{{ . }}" target="_blank" rel="noopener">{{ .url }}</a> {{ end }}
       </li>
       {{ end }}
       {{ end }}